Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 CCR12P-201ENST00000446203 998 ntBASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPSF4LA6NMK7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 MIR1238-201ENST00000408483 83 ntBASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SLC25A6P5-201ENST00000435663 894 ntBASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPSF4LA6NMK7 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 BX088651.1-201ENST00000540551 451 ntBASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 FITM1-202ENST00000559294 800 ntBASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPSF4LA6NMK7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 AC092338.2-201ENST00000568827 1415 ntBASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.77■□□□□ 0.27
CPSF4LA6NMK7 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms