Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 DUTP2-201ENST00000519164 463 ntBASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 FZD10-202ENST00000539839 3282 ntBASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHA3Q9Y5H8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 INGX-201ENST00000359239 846 ntBASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 EGLN1P1-201ENST00000531623 762 ntBASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHA3Q9Y5H8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 SEC1P-202ENST00000473944 940 ntBASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 AL355075.4-201ENST00000554988 638 ntBASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 PP12613-201ENST00000424958 2230 ntBASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHA3Q9Y5H8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms