Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 AP000525.1-201ENST00000608286 694 ntBASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AL390955.1-201ENST00000428694 934 ntBASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AC116562.4-202ENST00000641738 218 ntBASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMA1Q9UHB6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 AC010653.2-201ENST00000623505 997 ntBASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMA1Q9UHB6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 SEC1P-202ENST00000473944 940 ntBASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMA1Q9UHB6 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.83■□□□□ 0.77
LIMA1Q9UHB6 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms