Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.53■□□□□ 0.72
CNTN3Q9P232 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 AC093010.1-201ENST00000473625 1624 ntBASIC19.52■□□□□ 0.72
CNTN3Q9P232 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 MTCL1P1-201ENST00000446207 792 ntBASIC19.52■□□□□ 0.72
CNTN3Q9P232 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.52■□□□□ 0.72
CNTN3Q9P232 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
CNTN3Q9P232 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CNTN3Q9P232 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CNTN3Q9P232 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.52■□□□□ 0.71
CNTN3Q9P232 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CNTN3Q9P232 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.52■□□□□ 0.71
CNTN3Q9P232 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 AC005336.2-201ENST00000593183 939 ntBASIC19.51■□□□□ 0.71
CNTN3Q9P232 AC099336.1-202ENST00000602961 463 ntBASIC19.51■□□□□ 0.71
CNTN3Q9P232 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CNTN3Q9P232 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CNTN3Q9P232 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 AL732292.2-201ENST00000609649 430 ntBASIC19.5■□□□□ 0.71
CNTN3Q9P232 AL121772.3-201ENST00000610840 674 ntBASIC19.5■□□□□ 0.71
CNTN3Q9P232 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CNTN3Q9P232 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.5■□□□□ 0.71
CNTN3Q9P232 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CNTN3Q9P232 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.49■□□□□ 0.71
CNTN3Q9P232 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms