Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC113347.1-201ENST00000413321 391 ntBASIC19.51■□□□□ 0.71
SIX2Q9NPC8 SPDYE15P-201ENST00000424157 909 ntBASIC19.51■□□□□ 0.71
SIX2Q9NPC8 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 AC011558.1-201ENST00000623459 338 ntBASIC19.51■□□□□ 0.71
SIX2Q9NPC8 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.51■□□□□ 0.71
SIX2Q9NPC8 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.51■□□□□ 0.71
SIX2Q9NPC8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 COX11P1-201ENST00000489116 835 ntBASIC19.5■□□□□ 0.71
SIX2Q9NPC8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SIX2Q9NPC8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 AL391807.1-203ENST00000604392 2365 ntBASIC19.49■□□□□ 0.71
SIX2Q9NPC8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
SIX2Q9NPC8 LINC00602-201ENST00000629776 2065 ntBASIC19.48■□□□□ 0.71
SIX2Q9NPC8 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.48■□□□□ 0.71
SIX2Q9NPC8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.48■□□□□ 0.71
SIX2Q9NPC8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms