Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 POLD2P1-201ENST00000511220 997 ntBASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AP001269.4-201ENST00000609611 512 ntBASIC18.21■□□□□ 0.51
HMGB4Q8WW32 MIR7706-201ENST00000613747 67 ntBASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AC139530.3-201ENST00000620344 690 ntBASIC18.21■□□□□ 0.51
HMGB4Q8WW32 AC009154.2-201ENST00000621177 724 ntBASIC18.21■□□□□ 0.51
HMGB4Q8WW32 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGB4Q8WW32 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
HMGB4Q8WW32 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HMGB4Q8WW32 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 AL499627.1-201ENST00000569373 2188 ntBASIC18.2■□□□□ 0.5
HMGB4Q8WW32 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 SCARNA2-201ENST00000458748 420 ntBASIC18.2■□□□□ 0.5
HMGB4Q8WW32 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 AC139887.3-201ENST00000568585 713 ntBASIC18.2■□□□□ 0.5
HMGB4Q8WW32 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 FAM215A-202ENST00000632077 792 ntBASIC18.2■□□□□ 0.5
HMGB4Q8WW32 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGB4Q8WW32 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.19■□□□□ 0.5
HMGB4Q8WW32 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 RPL13AP23-201ENST00000480739 586 ntBASIC18.19■□□□□ 0.5
HMGB4Q8WW32 AC092865.5-201ENST00000545435 363 ntBASIC18.19■□□□□ 0.5
HMGB4Q8WW32 AC106730.1-201ENST00000566722 1090 ntBASIC18.19■□□□□ 0.5
HMGB4Q8WW32 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
HMGB4Q8WW32 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 HNRNPDP1-201ENST00000439535 754 ntBASIC18.18■□□□□ 0.5
HMGB4Q8WW32 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 AL138831.2-201ENST00000606564 490 ntBASIC18.18■□□□□ 0.5
HMGB4Q8WW32 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGB4Q8WW32 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGB4Q8WW32 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms