Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AL645929.1-201ENST00000420084 975 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 CLEC4GP1-201ENST00000596555 870 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AC004263.2-201ENST00000617183 678 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 BX664615.1-201ENST00000443558 458 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 RNF126P1-202ENST00000569893 925 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AC005332.8-201ENST00000622750 2735 ntBASIC18.53■□□□□ 0.56
SHROOM3Q8TF72 AC008764.6-201ENST00000595909 2069 ntBASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHROOM3Q8TF72 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.52■□□□□ 0.55
SHROOM3Q8TF72 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM3Q8TF72 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.52■□□□□ 0.55
SHROOM3Q8TF72 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM3Q8TF72 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHROOM3Q8TF72 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 FAM86EP-206ENST00000510506 987 ntBASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 NOC2LP2-201ENST00000407594 1944 ntBASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 LINC01311-201ENST00000565162 1445 ntBASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 AC100803.2-201ENST00000562459 1963 ntBASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms