Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USHBP1Q8N6Y0 AC132938.6-201ENST00000623828 1655 ntBASIC23.89■■□□□ 1.42
USHBP1Q8N6Y0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USHBP1Q8N6Y0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.89■■□□□ 1.42
USHBP1Q8N6Y0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
USHBP1Q8N6Y0 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 TERC-201ENST00000602385 541 ntBASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 AC025062.2-201ENST00000605477 670 ntBASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USHBP1Q8N6Y0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
USHBP1Q8N6Y0 AC104109.2-201ENST00000602919 1418 ntBASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 IGHV3-22-201ENST00000520721 359 ntBASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC23.87■■□□□ 1.41
USHBP1Q8N6Y0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 AC126763.1-201ENST00000552015 2118 ntBASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 AC092910.1-201ENST00000482027 1129 ntBASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USHBP1Q8N6Y0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 PMS2P7-201ENST00000506558 1336 ntBASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 AL356309.3-201ENST00000624132 1934 ntBASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.85■■□□□ 1.41
USHBP1Q8N6Y0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms