Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 AL020996.1-203ENST00000536896 2307 ntBASIC28.3■■■□□ 2.12
VPS8Q8N3P4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
VPS8Q8N3P4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS8Q8N3P4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 MINOS1P3-201ENST00000457048 203 ntBASIC28.28■■■□□ 2.12
VPS8Q8N3P4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 AL121772.3-201ENST00000610840 674 ntBASIC28.28■■■□□ 2.12
VPS8Q8N3P4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 AL691432.3-201ENST00000621860 400 ntBASIC28.28■■■□□ 2.12
VPS8Q8N3P4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
VPS8Q8N3P4 REXO1L9P-201ENST00000604264 2108 ntBASIC28.28■■■□□ 2.12
VPS8Q8N3P4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 AC096633.1-201ENST00000422446 749 ntBASIC28.27■■■□□ 2.12
VPS8Q8N3P4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 RN7SL510P-201ENST00000581311 263 ntBASIC28.27■■■□□ 2.12
VPS8Q8N3P4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 TP73-AS1-210ENST00000637775 1455 ntBASIC28.27■■■□□ 2.12
VPS8Q8N3P4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 AL354751.1-201ENST00000412768 1863 ntBASIC28.27■■■□□ 2.12
VPS8Q8N3P4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
VPS8Q8N3P4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
VPS8Q8N3P4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
VPS8Q8N3P4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms