Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 KRT89P-201ENST00000620027 1478 ntBASIC17.77■□□□□ 0.44
VRK3Q8IV63 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.77■□□□□ 0.44
VRK3Q8IV63 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 AC004263.2-201ENST00000617183 678 ntBASIC17.77■□□□□ 0.44
VRK3Q8IV63 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VRK3Q8IV63 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
VRK3Q8IV63 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.77■□□□□ 0.43
VRK3Q8IV63 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.77■□□□□ 0.43
VRK3Q8IV63 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.77■□□□□ 0.43
VRK3Q8IV63 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VRK3Q8IV63 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
VRK3Q8IV63 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 AP003733.1-201ENST00000491725 852 ntBASIC17.76■□□□□ 0.43
VRK3Q8IV63 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 AC087388.1-201ENST00000571370 1112 ntBASIC17.76■□□□□ 0.43
VRK3Q8IV63 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VRK3Q8IV63 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.76■□□□□ 0.43
VRK3Q8IV63 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AC138028.4-201ENST00000564984 1845 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 IGHGP-201ENST00000390555 1178 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AL645929.1-201ENST00000420084 975 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AC113404.2-201ENST00000507884 177 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 FAM86EP-206ENST00000510506 987 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AL136038.3-201ENST00000561909 1096 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.75■□□□□ 0.43
VRK3Q8IV63 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms