Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 AL109659.2-201ENST00000606809 1674 ntBASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC58Q4VC31 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC58Q4VC31 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 KRT17P3-201ENST00000420566 1262 ntBASIC16.28■□□□□ 0.2
CCDC58Q4VC31 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 FLJ38576-201ENST00000623820 2459 ntBASIC16.28■□□□□ 0.2
CCDC58Q4VC31 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 AL118508.1-201ENST00000613502 2345 ntBASIC16.28■□□□□ 0.2
CCDC58Q4VC31 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC58Q4VC31 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 PCDH8P1-201ENST00000428983 2773 ntBASIC16.27■□□□□ 0.2
CCDC58Q4VC31 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC58Q4VC31 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms