Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
CTCFP49711 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.99■□□□□ 0.95
CTCFP49711 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.99■□□□□ 0.95
CTCFP49711 INGX-202ENST00000489074 768 ntBASIC20.99■□□□□ 0.95
CTCFP49711 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.99■□□□□ 0.95
CTCFP49711 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.99■□□□□ 0.95
CTCFP49711 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.99■□□□□ 0.95
CTCFP49711 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CTCFP49711 AC099778.1-201ENST00000568593 1911 ntBASIC20.99■□□□□ 0.95
CTCFP49711 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.99■□□□□ 0.95
CTCFP49711 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CTCFP49711 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.98■□□□□ 0.95
CTCFP49711 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 CRYGEP-201ENST00000412192 528 ntBASIC20.98■□□□□ 0.95
CTCFP49711 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.98■□□□□ 0.95
CTCFP49711 FAM86GP-201ENST00000448322 971 ntBASIC20.98■□□□□ 0.95
CTCFP49711 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CTCFP49711 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.98■□□□□ 0.95
CTCFP49711 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
CTCFP49711 AC004835.2-201ENST00000603762 682 ntBASIC20.98■□□□□ 0.95
CTCFP49711 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.98■□□□□ 0.95
CTCFP49711 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CTCFP49711 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.98■□□□□ 0.95
CTCFP49711 GPR89P-201ENST00000407924 1495 ntBASIC20.98■□□□□ 0.95
CTCFP49711 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.98■□□□□ 0.95
CTCFP49711 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTCFP49711 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.98■□□□□ 0.95
CTCFP49711 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.97■□□□□ 0.95
CTCFP49711 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.97■□□□□ 0.95
CTCFP49711 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.97■□□□□ 0.95
CTCFP49711 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 KRT18P27-201ENST00000427733 1299 ntBASIC20.97■□□□□ 0.95
CTCFP49711 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC20.97■□□□□ 0.95
CTCFP49711 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC20.97■□□□□ 0.95
CTCFP49711 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.97■□□□□ 0.95
CTCFP49711 AC006557.2-201ENST00000592985 1240 ntBASIC20.97■□□□□ 0.95
CTCFP49711 AL606495.2-201ENST00000605867 535 ntBASIC20.97■□□□□ 0.95
CTCFP49711 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.97■□□□□ 0.95
CTCFP49711 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.97■□□□□ 0.95
CTCFP49711 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.97■□□□□ 0.95
CTCFP49711 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTCFP49711 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CTCFP49711 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.96■□□□□ 0.95
CTCFP49711 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.96■□□□□ 0.95
CTCFP49711 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.96■□□□□ 0.95
CTCFP49711 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.96■□□□□ 0.95
CTCFP49711 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms