Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.11■□□□□ 0.33
RFX3P48380 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RFX3P48380 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 AL512604.3-201ENST00000569583 964 ntBASIC17.11■□□□□ 0.33
RFX3P48380 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RFX3P48380 AC024243.1-201ENST00000609234 778 ntBASIC17.11■□□□□ 0.33
RFX3P48380 AC005363.2-201ENST00000618631 242 ntBASIC17.11■□□□□ 0.33
RFX3P48380 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFX3P48380 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 KRT8P50-201ENST00000562022 1438 ntBASIC17.11■□□□□ 0.33
RFX3P48380 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
RFX3P48380 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.11■□□□□ 0.33
RFX3P48380 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 ECEL1P3-201ENST00000427961 737 ntBASIC17.1■□□□□ 0.33
RFX3P48380 AL137013.1-201ENST00000432946 1228 ntBASIC17.1■□□□□ 0.33
RFX3P48380 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.1■□□□□ 0.33
RFX3P48380 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
RFX3P48380 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
RFX3P48380 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
RFX3P48380 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.1■□□□□ 0.33
RFX3P48380 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.1■□□□□ 0.33
RFX3P48380 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFX3P48380 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX3P48380 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.09■□□□□ 0.33
RFX3P48380 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 AP000593.1-201ENST00000393668 712 ntBASIC17.09■□□□□ 0.33
RFX3P48380 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.09■□□□□ 0.33
RFX3P48380 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.09■□□□□ 0.33
RFX3P48380 AC010203.1-204ENST00000548782 407 ntBASIC17.09■□□□□ 0.33
RFX3P48380 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.09■□□□□ 0.33
RFX3P48380 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.09■□□□□ 0.33
RFX3P48380 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFX3P48380 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms