Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
HOXD3P31249 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 MIR662-201ENST00000384847 95 ntBASIC14.06□□□□□ -0.16
HOXD3P31249 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXD3P31249 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 FDX1P1-201ENST00000449115 551 ntBASIC14.06□□□□□ -0.16
HOXD3P31249 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.06□□□□□ -0.16
HOXD3P31249 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 SDHAP2-201ENST00000455183 2001 ntBASIC14.06□□□□□ -0.16
HOXD3P31249 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
HOXD3P31249 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HOXD3P31249 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD3P31249 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
HOXD3P31249 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD3P31249 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
HOXD3P31249 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
HOXD3P31249 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXD3P31249 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 EMBP1-201ENST00000458200 901 ntBASIC14.05□□□□□ -0.16
HOXD3P31249 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXD3P31249 AC024563.2-201ENST00000603282 481 ntBASIC14.05□□□□□ -0.16
HOXD3P31249 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.05□□□□□ -0.16
HOXD3P31249 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXD3P31249 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD3P31249 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD3P31249 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD3P31249 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD3P31249 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AC004408.2-201ENST00000623613 2777 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXD3P31249 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AP000347.1-202ENST00000435868 847 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 FAAHP1-202ENST00000446499 1238 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 TOB2P1-201ENST00000469761 992 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 AP003733.1-201ENST00000491725 852 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms