Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 TUBB3P1-201ENST00000405796 1332 ntBASIC23.68■■□□□ 1.38
RXRBP28702 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.68■■□□□ 1.38
RXRBP28702 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC23.68■■□□□ 1.38
RXRBP28702 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.68■■□□□ 1.38
RXRBP28702 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC23.68■■□□□ 1.38
RXRBP28702 AC007967.3-201ENST00000434308 558 ntBASIC23.68■■□□□ 1.38
RXRBP28702 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC23.68■■□□□ 1.38
RXRBP28702 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC23.68■■□□□ 1.38
RXRBP28702 SLC25A39P2-201ENST00000537614 270 ntBASIC23.68■■□□□ 1.38
RXRBP28702 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC23.68■■□□□ 1.38
RXRBP28702 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RXRBP28702 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
RXRBP28702 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
RXRBP28702 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.67■■□□□ 1.38
RXRBP28702 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
RXRBP28702 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 RN7SL692P-201ENST00000464677 288 ntBASIC23.67■■□□□ 1.38
RXRBP28702 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC23.67■■□□□ 1.38
RXRBP28702 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC23.67■■□□□ 1.38
RXRBP28702 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC23.67■■□□□ 1.38
RXRBP28702 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC23.67■■□□□ 1.38
RXRBP28702 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC23.67■■□□□ 1.38
RXRBP28702 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
RXRBP28702 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
RXRBP28702 FEM1AP3-201ENST00000403722 1741 ntBASIC23.67■■□□□ 1.38
RXRBP28702 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC23.67■■□□□ 1.38
RXRBP28702 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RXRBP28702 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
RXRBP28702 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
RXRBP28702 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC23.66■■□□□ 1.38
RXRBP28702 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC23.66■■□□□ 1.38
RXRBP28702 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC23.66■■□□□ 1.38
RXRBP28702 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 KRT18P65-201ENST00000439811 1286 ntBASIC23.66■■□□□ 1.38
RXRBP28702 KLF2P3-201ENST00000451977 1087 ntBASIC23.66■■□□□ 1.38
RXRBP28702 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC23.66■■□□□ 1.38
RXRBP28702 AC112698.1-201ENST00000510299 916 ntBASIC23.66■■□□□ 1.38
RXRBP28702 KRT18P41-201ENST00000518924 1277 ntBASIC23.66■■□□□ 1.38
RXRBP28702 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.66■■□□□ 1.38
RXRBP28702 AL662799.1-202ENST00000614205 422 ntBASIC23.66■■□□□ 1.38
RXRBP28702 SRP9-204ENST00000619790 377 ntTSL 2 BASIC23.66■■□□□ 1.38
RXRBP28702 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC23.66■■□□□ 1.38
RXRBP28702 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC23.66■■□□□ 1.38
RXRBP28702 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC23.66■■□□□ 1.38
RXRBP28702 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
RXRBP28702 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RXRBP28702 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.65■■□□□ 1.38
RXRBP28702 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
RXRBP28702 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC23.65■■□□□ 1.38
RXRBP28702 IGHV3-71-201ENST00000523324 359 ntBASIC23.65■■□□□ 1.38
RXRBP28702 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC23.65■■□□□ 1.38
RXRBP28702 AC068137.2-201ENST00000605408 478 ntBASIC23.65■■□□□ 1.38
RXRBP28702 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC23.65■■□□□ 1.38
RXRBP28702 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.65■■□□□ 1.38
RXRBP28702 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RXRBP28702 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
RXRBP28702 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC23.64■■□□□ 1.38
RXRBP28702 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
RXRBP28702 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC23.64■■□□□ 1.37
RXRBP28702 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 GATB-205ENST00000508611 605 ntTSL 2 BASIC23.64■■□□□ 1.37
RXRBP28702 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
RXRBP28702 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.64■■□□□ 1.37
RXRBP28702 SPDYE22P-201ENST00000582158 798 ntBASIC23.64■■□□□ 1.37
RXRBP28702 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
RXRBP28702 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.37
RXRBP28702 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RXRBP28702 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.64■■□□□ 1.37
RXRBP28702 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RXRBP28702 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
RXRBP28702 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
RXRBP28702 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms