Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.83■□□□□ 0.92
SMARCA1P28370 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
SMARCA1P28370 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
SMARCA1P28370 FLJ13224-201ENST00000313737 1514 ntBASIC20.83■□□□□ 0.92
SMARCA1P28370 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.83■□□□□ 0.92
SMARCA1P28370 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.83■□□□□ 0.92
SMARCA1P28370 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.82■□□□□ 0.92
SMARCA1P28370 VENTXP7-201ENST00000475503 772 ntBASIC20.82■□□□□ 0.92
SMARCA1P28370 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.82■□□□□ 0.92
SMARCA1P28370 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.82■□□□□ 0.92
SMARCA1P28370 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.82■□□□□ 0.92
SMARCA1P28370 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.82■□□□□ 0.92
SMARCA1P28370 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
SMARCA1P28370 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMARCA1P28370 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.81■□□□□ 0.92
SMARCA1P28370 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SMARCA1P28370 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SMARCA1P28370 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SMARCA1P28370 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 HCG4P8-203ENST00000443049 980 ntBASIC20.81■□□□□ 0.92
SMARCA1P28370 TOB2P1-201ENST00000469761 992 ntBASIC20.81■□□□□ 0.92
SMARCA1P28370 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.81■□□□□ 0.92
SMARCA1P28370 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 AC012615.1-201ENST00000565797 1299 ntBASIC20.81■□□□□ 0.92
SMARCA1P28370 Z69720.1-201ENST00000601483 472 ntBASIC20.81■□□□□ 0.92
SMARCA1P28370 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 AL354751.1-201ENST00000412768 1863 ntBASIC20.81■□□□□ 0.92
SMARCA1P28370 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.81■□□□□ 0.92
SMARCA1P28370 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMARCA1P28370 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 AC097374.2-201ENST00000618617 1306 ntBASIC20.8■□□□□ 0.92
SMARCA1P28370 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCA1P28370 IGHV3-47-201ENST00000425060 335 ntBASIC20.8■□□□□ 0.92
SMARCA1P28370 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.8■□□□□ 0.92
SMARCA1P28370 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.8■□□□□ 0.92
SMARCA1P28370 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMARCA1P28370 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.8■□□□□ 0.92
SMARCA1P28370 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.79■□□□□ 0.92
SMARCA1P28370 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SMARCA1P28370 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.79■□□□□ 0.92
SMARCA1P28370 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.79■□□□□ 0.92
SMARCA1P28370 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms