Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
PCNAP12004 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.74■□□□□ 0.43
PCNAP12004 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
PCNAP12004 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.74■□□□□ 0.43
PCNAP12004 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PCNAP12004 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCNAP12004 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCNAP12004 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCNAP12004 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCNAP12004 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.74■□□□□ 0.43
PCNAP12004 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 AC135776.1-201ENST00000319817 2481 ntBASIC17.73■□□□□ 0.43
PCNAP12004 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.73■□□□□ 0.43
PCNAP12004 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PCNAP12004 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 FAM87A-204ENST00000613235 858 ntBASIC17.73■□□□□ 0.43
PCNAP12004 AC112497.1-201ENST00000624824 639 ntBASIC17.73■□□□□ 0.43
PCNAP12004 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCNAP12004 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
PCNAP12004 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.73■□□□□ 0.43
PCNAP12004 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCNAP12004 HOXB1-202ENST00000577092 1414 ntBASIC17.72■□□□□ 0.43
PCNAP12004 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PCNAP12004 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PCNAP12004 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.72■□□□□ 0.43
PCNAP12004 AL162741.1-201ENST00000565563 1558 ntBASIC17.72■□□□□ 0.43
PCNAP12004 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.72■□□□□ 0.43
PCNAP12004 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
PCNAP12004 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 HMGA1P5-201ENST00000412453 271 ntBASIC17.72■□□□□ 0.43
PCNAP12004 AC087499.1-201ENST00000418141 1075 ntBASIC17.72■□□□□ 0.43
PCNAP12004 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.72■□□□□ 0.43
PCNAP12004 AC009947.2-201ENST00000444014 672 ntBASIC17.72■□□□□ 0.43
PCNAP12004 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.72■□□□□ 0.43
PCNAP12004 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.72■□□□□ 0.43
PCNAP12004 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PCNAP12004 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCNAP12004 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms