Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 BCL2-203ENST00000589955 5011 ntBASIC21.47■■□□□ 1.03
HMGB1P09429 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
HMGB1P09429 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
HMGB1P09429 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 AC018470.1-201ENST00000624790 3129 ntBASIC21.46■■□□□ 1.03
HMGB1P09429 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.46■■□□□ 1.03
HMGB1P09429 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 TSPY5P-201ENST00000426936 936 ntBASIC21.46■■□□□ 1.03
HMGB1P09429 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.46■■□□□ 1.03
HMGB1P09429 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 AC024563.2-201ENST00000603282 481 ntBASIC21.46■■□□□ 1.03
HMGB1P09429 AL136038.4-201ENST00000603606 1261 ntBASIC21.46■■□□□ 1.03
HMGB1P09429 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 AC079602.3-201ENST00000623931 403 ntBASIC21.46■■□□□ 1.03
HMGB1P09429 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGB1P09429 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
HMGB1P09429 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.46■■□□□ 1.03
HMGB1P09429 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB1P09429 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGB1P09429 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
HMGB1P09429 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
HMGB1P09429 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGB1P09429 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.45■■□□□ 1.02
HMGB1P09429 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.45■■□□□ 1.02
HMGB1P09429 FAM8A6P-201ENST00000407496 1135 ntBASIC21.45■■□□□ 1.02
HMGB1P09429 HLA-F-220ENST00000434407 884 ntBASIC21.45■■□□□ 1.02
HMGB1P09429 KRT18P57-201ENST00000443599 1254 ntBASIC21.45■■□□□ 1.02
HMGB1P09429 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.45■■□□□ 1.02
HMGB1P09429 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 AC068880.1-201ENST00000507289 2297 ntBASIC21.45■■□□□ 1.02
HMGB1P09429 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
HMGB1P09429 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
HMGB1P09429 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGB1P09429 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGB1P09429 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 AC132938.6-201ENST00000623828 1655 ntBASIC21.44■■□□□ 1.02
HMGB1P09429 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 SPDYE15P-201ENST00000424157 909 ntBASIC21.44■■□□□ 1.02
HMGB1P09429 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.44■■□□□ 1.02
HMGB1P09429 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.44■■□□□ 1.02
HMGB1P09429 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
HMGB1P09429 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGB1P09429 KRT18P55-202ENST00000578578 1546 ntBASIC21.44■■□□□ 1.02
HMGB1P09429 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
HMGB1P09429 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
HMGB1P09429 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.43■■□□□ 1.02
HMGB1P09429 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.43■■□□□ 1.02
HMGB1P09429 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.43■■□□□ 1.02
HMGB1P09429 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 AK4P3-201ENST00000418260 669 ntBASIC21.43■■□□□ 1.02
HMGB1P09429 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.43■■□□□ 1.02
HMGB1P09429 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.43■■□□□ 1.02
HMGB1P09429 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 AC006011.2-201ENST00000621313 1158 ntBASIC21.43■■□□□ 1.02
HMGB1P09429 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGB1P09429 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms