Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXC4P09017 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXC4P09017 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXC4P09017 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC4P09017 FDX1P1-201ENST00000449115 551 ntBASIC17.68■□□□□ 0.42
HOXC4P09017 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC4P09017 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXC4P09017 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.68■□□□□ 0.42
HOXC4P09017 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HOXC4P09017 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HOXC4P09017 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXC4P09017 AL031008.1-201ENST00000619963 541 ntBASIC17.68■□□□□ 0.42
HOXC4P09017 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC4P09017 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC4P09017 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HOXC4P09017 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC4P09017 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.67■□□□□ 0.42
HOXC4P09017 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.67■□□□□ 0.42
HOXC4P09017 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 AC098818.2-201ENST00000564925 2320 ntBASIC17.67■□□□□ 0.42
HOXC4P09017 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 AC093677.2-201ENST00000600169 1863 ntBASIC17.67■□□□□ 0.42
HOXC4P09017 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HOXC4P09017 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC4P09017 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC4P09017 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HOXC4P09017 KRT8P10-201ENST00000450021 1447 ntBASIC17.66■□□□□ 0.42
HOXC4P09017 AC093503.3-201ENST00000624917 2352 ntBASIC17.66■□□□□ 0.42
HOXC4P09017 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 AC132008.2-207ENST00000454517 770 ntBASIC17.66■□□□□ 0.42
HOXC4P09017 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.66■□□□□ 0.42
HOXC4P09017 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXC4P09017 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC4P09017 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXC4P09017 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HOXC4P09017 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.66■□□□□ 0.42
HOXC4P09017 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXC4P09017 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXC4P09017 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HOXC4P09017 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HOXC4P09017 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXC4P09017 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXC4P09017 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
HOXC4P09017 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms