Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC28.21■■■□□ 2.11
PCF11O94913 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
PCF11O94913 IGHV3-22-201ENST00000520721 359 ntBASIC28.21■■■□□ 2.11
PCF11O94913 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
PCF11O94913 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC28.21■■■□□ 2.11
PCF11O94913 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCF11O94913 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC28.21■■■□□ 2.11
PCF11O94913 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC28.2■■■□□ 2.11
PCF11O94913 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC28.2■■■□□ 2.11
PCF11O94913 AC106730.1-201ENST00000566722 1090 ntBASIC28.2■■■□□ 2.11
PCF11O94913 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC28.2■■■□□ 2.11
PCF11O94913 AC064862.7-201ENST00000604520 867 ntBASIC28.2■■■□□ 2.11
PCF11O94913 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC28.2■■■□□ 2.11
PCF11O94913 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC28.2■■■□□ 2.11
PCF11O94913 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
PCF11O94913 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCF11O94913 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC28.2■■■□□ 2.1
PCF11O94913 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC28.2■■■□□ 2.1
PCF11O94913 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
PCF11O94913 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC28.2■■■□□ 2.1
PCF11O94913 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCF11O94913 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCF11O94913 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
PCF11O94913 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC28.2■■■□□ 2.1
PCF11O94913 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCF11O94913 FABP5-202ENST00000396359 986 ntTSL 5 BASIC28.2■■■□□ 2.1
PCF11O94913 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC28.2■■■□□ 2.1
PCF11O94913 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
PCF11O94913 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
PCF11O94913 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 FUOM-202ENST00000368551 628 ntTSL 3 BASIC28.19■■■□□ 2.1
PCF11O94913 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
PCF11O94913 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 AC145285.3-201ENST00000564603 959 ntBASIC28.19■■■□□ 2.1
PCF11O94913 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
PCF11O94913 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC28.19■■■□□ 2.1
PCF11O94913 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCF11O94913 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC28.18■■■□□ 2.1
PCF11O94913 RPS2P1-201ENST00000434010 821 ntBASIC28.18■■■□□ 2.1
PCF11O94913 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCF11O94913 RNPS1P1-201ENST00000507437 918 ntBASIC28.18■■■□□ 2.1
PCF11O94913 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PCF11O94913 AC055717.3-201ENST00000622967 595 ntBASIC28.18■■■□□ 2.1
PCF11O94913 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
PCF11O94913 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCF11O94913 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC28.17■■■□□ 2.1
PCF11O94913 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC28.17■■■□□ 2.1
PCF11O94913 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC28.17■■■□□ 2.1
PCF11O94913 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC28.17■■■□□ 2.1
PCF11O94913 TERC-201ENST00000602385 541 ntBASIC28.17■■■□□ 2.1
PCF11O94913 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
PCF11O94913 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC28.17■■■□□ 2.1
PCF11O94913 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PCF11O94913 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
PCF11O94913 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC28.16■■■□□ 2.1
PCF11O94913 MIR3197-201ENST00000582241 73 ntBASIC28.16■■■□□ 2.1
PCF11O94913 PRKN-208ENST00000610470 531 ntTSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 PRKN-209ENST00000612485 225 ntTSL 5 BASIC28.16■■■□□ 2.1
PCF11O94913 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC28.16■■■□□ 2.1
PCF11O94913 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCF11O94913 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC28.16■■■□□ 2.1
PCF11O94913 URGCP-206ENST00000446958 365 ntTSL 2 BASIC28.16■■■□□ 2.1
PCF11O94913 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC28.16■■■□□ 2.1
PCF11O94913 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC28.16■■■□□ 2.1
PCF11O94913 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC28.16■■■□□ 2.1
PCF11O94913 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC28.15■■■□□ 2.1
PCF11O94913 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCF11O94913 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
PCF11O94913 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms