Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
VPS4BO75351 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VPS4BO75351 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS4BO75351 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS4BO75351 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 AC134043.2-201ENST00000624206 2238 ntBASIC17.86■□□□□ 0.45
VPS4BO75351 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS4BO75351 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VPS4BO75351 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.86■□□□□ 0.45
VPS4BO75351 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.86■□□□□ 0.45
VPS4BO75351 CRYGFP-201ENST00000418459 633 ntBASIC17.86■□□□□ 0.45
VPS4BO75351 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 AC092647.4-201ENST00000457211 535 ntBASIC17.86■□□□□ 0.45
VPS4BO75351 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.86■□□□□ 0.45
VPS4BO75351 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VPS4BO75351 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS4BO75351 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
VPS4BO75351 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
VPS4BO75351 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS4BO75351 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VPS4BO75351 REXO1L9P-201ENST00000604264 2108 ntBASIC17.86■□□□□ 0.45
VPS4BO75351 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VPS4BO75351 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.85■□□□□ 0.45
VPS4BO75351 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 AC097488.1-201ENST00000507834 756 ntBASIC17.85■□□□□ 0.45
VPS4BO75351 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
VPS4BO75351 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS4BO75351 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.85■□□□□ 0.45
VPS4BO75351 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS4BO75351 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS4BO75351 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS4BO75351 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS4BO75351 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 AP000550.4-202ENST00000639755 178 ntBASIC17.85■□□□□ 0.45
VPS4BO75351 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS4BO75351 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 GMCL1P1-201ENST00000463439 1581 ntBASIC17.84■□□□□ 0.45
VPS4BO75351 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VPS4BO75351 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS4BO75351 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
VPS4BO75351 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 MIR564-202ENST00000385049 94 ntBASIC17.84■□□□□ 0.45
VPS4BO75351 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 RNF152P1-201ENST00000397754 604 ntBASIC17.84■□□□□ 0.45
VPS4BO75351 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.84■□□□□ 0.45
VPS4BO75351 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms