Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 BICD1-207ENST00000551848 1962 ntBASIC20.38■□□□□ 0.85
MSH4O15457 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MSH4O15457 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH4O15457 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
MSH4O15457 LINC00265-3P-201ENST00000447588 903 ntBASIC20.38■□□□□ 0.85
MSH4O15457 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
MSH4O15457 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH4O15457 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
MSH4O15457 AP005901.3-202ENST00000581653 237 ntBASIC20.38■□□□□ 0.85
MSH4O15457 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
MSH4O15457 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH4O15457 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH4O15457 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSH4O15457 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.37■□□□□ 0.85
MSH4O15457 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 AC233702.3-201ENST00000578656 1387 ntBASIC20.37■□□□□ 0.85
MSH4O15457 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSH4O15457 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
MSH4O15457 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.37■□□□□ 0.85
MSH4O15457 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.37■□□□□ 0.85
MSH4O15457 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH4O15457 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH4O15457 REXO1L9P-201ENST00000604264 2108 ntBASIC20.36■□□□□ 0.85
MSH4O15457 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
MSH4O15457 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH4O15457 MTCL1P1-201ENST00000446207 792 ntBASIC20.36■□□□□ 0.85
MSH4O15457 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH4O15457 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.36■□□□□ 0.85
MSH4O15457 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
MSH4O15457 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.36■□□□□ 0.85
MSH4O15457 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.36■□□□□ 0.85
MSH4O15457 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
MSH4O15457 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.36■□□□□ 0.85
MSH4O15457 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH4O15457 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH4O15457 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 AP000867.3-201ENST00000524675 377 ntBASIC20.35■□□□□ 0.85
MSH4O15457 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH4O15457 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH4O15457 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH4O15457 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
MSH4O15457 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms