Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
TRIM38O00635 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM38O00635 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM38O00635 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM38O00635 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.31■□□□□ 0.52
TRIM38O00635 BX276092.5-203ENST00000456199 560 ntBASIC18.31■□□□□ 0.52
TRIM38O00635 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM38O00635 MIR3180-1-201ENST00000580374 94 ntBASIC18.31■□□□□ 0.52
TRIM38O00635 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.31■□□□□ 0.52
TRIM38O00635 MIR3180-3-201ENST00000584616 94 ntBASIC18.31■□□□□ 0.52
TRIM38O00635 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 KRT8P3-201ENST00000519669 1449 ntBASIC18.31■□□□□ 0.52
TRIM38O00635 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM38O00635 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM38O00635 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM38O00635 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM38O00635 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM38O00635 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM38O00635 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 AP002383.4-201ENST00000442518 975 ntBASIC18.3■□□□□ 0.52
TRIM38O00635 PRELID1P1-202ENST00000567272 903 ntBASIC18.3■□□□□ 0.52
TRIM38O00635 AL121672.3-201ENST00000608644 468 ntBASIC18.3■□□□□ 0.52
TRIM38O00635 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 AL157888.1-201ENST00000631930 593 ntBASIC18.3■□□□□ 0.52
TRIM38O00635 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM38O00635 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM38O00635 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM38O00635 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM38O00635 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM38O00635 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM38O00635 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM38O00635 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM38O00635 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM38O00635 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM38O00635 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRIM38O00635 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM38O00635 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM38O00635 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms