Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
UPK1AO00322 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 FLJ13224-201ENST00000313737 1514 ntBASIC17.26■□□□□ 0.35
UPK1AO00322 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.26■□□□□ 0.35
UPK1AO00322 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPK1AO00322 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 KRT18P22-201ENST00000402024 1347 ntBASIC17.25■□□□□ 0.35
UPK1AO00322 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.25■□□□□ 0.35
UPK1AO00322 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
UPK1AO00322 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
UPK1AO00322 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.25■□□□□ 0.35
UPK1AO00322 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.25■□□□□ 0.35
UPK1AO00322 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.25■□□□□ 0.35
UPK1AO00322 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.25■□□□□ 0.35
UPK1AO00322 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.25■□□□□ 0.35
UPK1AO00322 AC145285.6-201ENST00000604632 637 ntBASIC17.25■□□□□ 0.35
UPK1AO00322 AC112497.1-201ENST00000624824 639 ntBASIC17.25■□□□□ 0.35
UPK1AO00322 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.25■□□□□ 0.35
UPK1AO00322 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 AL163051.1-201ENST00000569214 1512 ntBASIC17.25■□□□□ 0.35
UPK1AO00322 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPK1AO00322 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
UPK1AO00322 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.24■□□□□ 0.35
UPK1AO00322 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.24■□□□□ 0.35
UPK1AO00322 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 AL512604.3-201ENST00000569583 964 ntBASIC17.24■□□□□ 0.35
UPK1AO00322 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
UPK1AO00322 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.24■□□□□ 0.35
UPK1AO00322 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UPK1AO00322 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.23■□□□□ 0.35
UPK1AO00322 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.23■□□□□ 0.35
UPK1AO00322 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.23■□□□□ 0.35
UPK1AO00322 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.23■□□□□ 0.35
UPK1AO00322 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.23■□□□□ 0.35
UPK1AO00322 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.23■□□□□ 0.35
UPK1AO00322 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UPK1AO00322 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
UPK1AO00322 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms