Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 Z98044.1-201ENST00000632503 1764 ntBASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC079776.2-201ENST00000641154 1609 ntBASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC020763.4-201ENST00000623414 4170 ntBASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 SIGLEC30P-201ENST00000455569 941 ntBASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 AC068472.1-201ENST00000474589 881 ntBASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL6A6A6NMZ7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 TCF3P1-201ENST00000423021 1937 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 ACTG1P14-201ENST00000446382 1122 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AC108073.2-201ENST00000464002 357 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AL031432.2-201ENST00000566714 459 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AL928711.1-201ENST00000570165 459 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 AL513210.1-201ENST00000629608 234 ntBASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL6A6A6NMZ7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AL157384.1-201ENST00000445995 2473 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 SIGLEC16-201ENST00000599858 1437 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 GPR89P-201ENST00000407924 1495 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 VN2R19P-201ENST00000442399 1052 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AC023141.5-201ENST00000458585 616 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 MIR6752-201ENST00000618442 71 ntBASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A6A6NMZ7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 GAPDHP21-201ENST00000450301 1010 ntBASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.3■□□□□ 0.2
COL6A6A6NMZ7 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms