Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USH1CQ9Y6N9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USH1CQ9Y6N9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USH1CQ9Y6N9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 GUSBP6-202ENST00000438529 1198 ntBASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USH1CQ9Y6N9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 KRT8P3-201ENST00000519669 1449 ntBASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 SLC29A4P1-201ENST00000398760 971 ntBASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 MIR5787-201ENST00000611784 55 ntBASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 AL096828.2-201ENST00000567259 1965 ntBASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.16■□□□□ 0.5
USH1CQ9Y6N9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 KRT8P11-201ENST00000409686 1436 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 NBPF21P-201ENST00000425093 1451 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 AL118508.1-201ENST00000613502 2345 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 Z85996.1-201ENST00000494644 937 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 PRKY-204ENST00000533551 1019 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 AL121761.2-201ENST00000598007 1648 ntBASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USH1CQ9Y6N9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms