Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 MIR718-201ENST00000390190 70 ntBASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 AC010653.2-201ENST00000623505 997 ntBASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 AL645608.8-201ENST00000606034 2086 ntBASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PCDHA3Q9Y5H8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHA3Q9Y5H8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
PCDHA3Q9Y5H8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 TSPY14P-201ENST00000303979 915 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 MIR1238-201ENST00000408483 83 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 C2orf69P3-201ENST00000565542 1120 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 AC010240.3-201ENST00000607688 395 ntBASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHA3Q9Y5H8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 CEP83-AS1-201ENST00000623122 2482 ntBASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHA3Q9Y5H8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms