Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 MTMR9LP-203ENST00000426597 1545 ntBASIC17.46■□□□□ 0.39
PCDHGA1Q9Y5H4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 AFG3L1P-217ENST00000557444 2447 ntBASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDHGA1Q9Y5H4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AL356309.3-201ENST00000624132 1934 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 RPS2P1-201ENST00000434010 821 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC098831.1-202ENST00000438821 336 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 MTCL1P1-201ENST00000446207 792 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 OR7E14P-202ENST00000530490 1290 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 SART3-203ENST00000546611 1184 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC034105.1-201ENST00000563488 319 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 Z83851.2-201ENST00000609564 659 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AL139288.1-201ENST00000623748 933 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC083906.6-201ENST00000641366 219 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC079781.4-201ENST00000641908 219 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 AC125634.1-201ENST00000438758 1403 ntBASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA1Q9Y5H4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 AC040169.1-201ENST00000565382 521 ntBASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDHGA1Q9Y5H4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms