Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NOC2LP1-202ENST00000452600 2235 ntBASIC17.67■□□□□ 0.42
VPS4AQ9UN37 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4AQ9UN37 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 AC112777.1-201ENST00000540175 1423 ntBASIC17.66■□□□□ 0.42
VPS4AQ9UN37 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 MFAP1P1-201ENST00000442257 1255 ntBASIC17.66■□□□□ 0.42
VPS4AQ9UN37 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.66■□□□□ 0.42
VPS4AQ9UN37 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4AQ9UN37 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AC069148.1-201ENST00000608741 768 ntBASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AC011558.1-201ENST00000623459 338 ntBASIC17.65■□□□□ 0.42
VPS4AQ9UN37 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 AL357033.4-201ENST00000617703 1807 ntBASIC17.65■□□□□ 0.42
VPS4AQ9UN37 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS4AQ9UN37 PCDHB18P-201ENST00000524813 2368 ntBASIC17.65■□□□□ 0.42
VPS4AQ9UN37 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.64■□□□□ 0.42
VPS4AQ9UN37 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 AL671277.2-201ENST00000458060 996 ntBASIC17.64■□□□□ 0.41
VPS4AQ9UN37 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 CLEC4GP1-201ENST00000596555 870 ntBASIC17.64■□□□□ 0.41
VPS4AQ9UN37 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.64■□□□□ 0.41
VPS4AQ9UN37 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms