Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 DRAXINP1-201ENST00000437611 948 ntBASIC19.44■□□□□ 0.7
SIX4Q9UIU6 AC068472.1-201ENST00000474589 881 ntBASIC19.44■□□□□ 0.7
SIX4Q9UIU6 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.44■□□□□ 0.7
SIX4Q9UIU6 AC009154.2-201ENST00000621177 724 ntBASIC19.44■□□□□ 0.7
SIX4Q9UIU6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX4Q9UIU6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 REXO1L9P-201ENST00000604264 2108 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 KRT18P65-201ENST00000439811 1286 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 AC091607.1-201ENST00000490318 1060 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 GUSBP12-201ENST00000513727 720 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 AL353801.3-201ENST00000609898 542 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 NEFHP1-201ENST00000412845 2629 ntBASIC19.43■□□□□ 0.7
SIX4Q9UIU6 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX4Q9UIU6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 HCG4P8-203ENST00000443049 980 ntBASIC19.42■□□□□ 0.7
SIX4Q9UIU6 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.42■□□□□ 0.7
SIX4Q9UIU6 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX4Q9UIU6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AC135050.7-201ENST00000624508 2218 ntBASIC19.41■□□□□ 0.7
SIX4Q9UIU6 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AP005901.3-202ENST00000581653 237 ntBASIC19.41■□□□□ 0.7
SIX4Q9UIU6 AC092329.2-201ENST00000598402 547 ntBASIC19.41■□□□□ 0.7
SIX4Q9UIU6 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX4Q9UIU6 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms