Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AC007663.1-201ENST00000438948 1240 ntBASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
LIMA1Q9UHB6 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 CCR12P-201ENST00000446203 998 ntBASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FITM1-202ENST00000559294 800 ntBASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 PRORSD1P-202ENST00000563365 2154 ntBASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 AC132938.6-201ENST00000623828 1655 ntBASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMA1Q9UHB6 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 FZD10-202ENST00000539839 3282 ntBASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 AC010240.3-201ENST00000607688 395 ntBASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 AC141586.5-201ENST00000624546 2050 ntBASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMA1Q9UHB6 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMA1Q9UHB6 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms