Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 KRT8P50-201ENST00000562022 1438 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 AL357033.4-201ENST00000617703 1807 ntBASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TM9SF3Q9HD45 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TM9SF3Q9HD45 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.21■□□□□ 0.5
TM9SF3Q9HD45 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 AL022342.1-201ENST00000400363 863 ntBASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 AC106795.1-205ENST00000512851 1056 ntBASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 AP005901.3-202ENST00000581653 237 ntBASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 AC138932.1-201ENST00000534164 6830 ntBASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TM9SF3Q9HD45 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 AC005082.1-201ENST00000413042 2259 ntBASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 AC091607.1-201ENST00000490318 1060 ntBASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TM9SF3Q9HD45 HEIH-201ENST00000623091 1652 ntBASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 AKR1C7P-201ENST00000305623 895 ntBASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 MRPL3P1-201ENST00000400109 1033 ntBASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 AC079776.4-201ENST00000511039 504 ntBASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 AL662844.1-201ENST00000546340 181 ntBASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TM9SF3Q9HD45 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms