Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 TMPOP1-202ENST00000424642 1267 ntBASIC14.1□□□□□ -0.15
CCDC140Q96MF4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC092647.4-201ENST00000457211 535 ntBASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC063952.2-201ENST00000498792 1227 ntBASIC14.09□□□□□ -0.15
CCDC140Q96MF4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC008687.5-201ENST00000593746 558 ntBASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 FLJ13224-201ENST00000313737 1514 ntBASIC14.09□□□□□ -0.15
CCDC140Q96MF4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC140Q96MF4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC140Q96MF4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 HLA-F-220ENST00000434407 884 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC112907.2-201ENST00000448639 330 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC092597.1-201ENST00000487352 616 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 DUX4L26-201ENST00000489078 1255 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 KRT18P21-201ENST00000515767 1272 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC022616.7-201ENST00000525383 220 ntBASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC140Q96MF4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms