Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 REXO1L3P-201ENST00000622202 1288 ntBASIC18.37■□□□□ 0.53
TTC28Q96AY4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 AL133338.1-201ENST00000565695 1517 ntBASIC18.37■□□□□ 0.53
TTC28Q96AY4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TTC28Q96AY4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.37■□□□□ 0.53
TTC28Q96AY4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 FAM58DP-201ENST00000428076 619 ntBASIC18.36■□□□□ 0.53
TTC28Q96AY4 MTCL1P1-201ENST00000446207 792 ntBASIC18.36■□□□□ 0.53
TTC28Q96AY4 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.36■□□□□ 0.53
TTC28Q96AY4 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.36■□□□□ 0.53
TTC28Q96AY4 KRT8P32-201ENST00000512863 1461 ntBASIC18.36■□□□□ 0.53
TTC28Q96AY4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TTC28Q96AY4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TTC28Q96AY4 AC092658.1-201ENST00000505836 891 ntBASIC18.35■□□□□ 0.53
TTC28Q96AY4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TTC28Q96AY4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TTC28Q96AY4 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.35■□□□□ 0.53
TTC28Q96AY4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TTC28Q96AY4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 KRT18P32-201ENST00000424695 1287 ntBASIC18.35■□□□□ 0.53
TTC28Q96AY4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TTC28Q96AY4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.35■□□□□ 0.53
TTC28Q96AY4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 KLF2P3-201ENST00000451977 1087 ntBASIC18.34■□□□□ 0.53
TTC28Q96AY4 TIMM8BP1-201ENST00000452384 211 ntBASIC18.34■□□□□ 0.53
TTC28Q96AY4 AC069335.1-201ENST00000489972 472 ntBASIC18.34■□□□□ 0.53
TTC28Q96AY4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TTC28Q96AY4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TTC28Q96AY4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 DDX43P3-201ENST00000441064 443 ntBASIC18.33■□□□□ 0.53
TTC28Q96AY4 FAM8A2P-201ENST00000528813 1142 ntBASIC18.33■□□□□ 0.53
TTC28Q96AY4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.33■□□□□ 0.53
TTC28Q96AY4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TTC28Q96AY4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms