Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 AC036111.1-201ENST00000533973 1582 ntBASIC20.68■□□□□ 0.9
ERCC4Q92889 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ERCC4Q92889 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.68■□□□□ 0.9
ERCC4Q92889 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.68■□□□□ 0.9
ERCC4Q92889 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ERCC4Q92889 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ERCC4Q92889 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ERCC4Q92889 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ERCC4Q92889 SDHAP2-201ENST00000455183 2001 ntBASIC20.68■□□□□ 0.9
ERCC4Q92889 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
ERCC4Q92889 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ERCC4Q92889 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.68■□□□□ 0.9
ERCC4Q92889 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.67■□□□□ 0.9
ERCC4Q92889 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.67■□□□□ 0.9
ERCC4Q92889 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
ERCC4Q92889 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
ERCC4Q92889 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.67■□□□□ 0.9
ERCC4Q92889 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ERCC4Q92889 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.67■□□□□ 0.9
ERCC4Q92889 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
ERCC4Q92889 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ERCC4Q92889 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 RPS2P55-201ENST00000397318 883 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 CRYGFP-201ENST00000418459 633 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 AC107956.1-201ENST00000494359 873 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.66■□□□□ 0.9
ERCC4Q92889 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 AC034236.2-201ENST00000606662 1610 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 GNAS-203ENST00000306120 1878 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.66■□□□□ 0.9
ERCC4Q92889 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ERCC4Q92889 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 PP12613-201ENST00000424958 2230 ntBASIC20.66■□□□□ 0.9
ERCC4Q92889 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ERCC4Q92889 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.65■□□□□ 0.9
ERCC4Q92889 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ERCC4Q92889 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 GMCL1P1-201ENST00000463439 1581 ntBASIC20.65■□□□□ 0.9
ERCC4Q92889 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.65■□□□□ 0.9
ERCC4Q92889 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.65■□□□□ 0.9
ERCC4Q92889 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.65■□□□□ 0.9
ERCC4Q92889 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.65■□□□□ 0.9
ERCC4Q92889 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.65■□□□□ 0.9
ERCC4Q92889 PKD1P1-201ENST00000458669 6805 ntBASIC20.65■□□□□ 0.9
ERCC4Q92889 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms