Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMC1BQ8NDV3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 VN2R19P-201ENST00000442399 1052 ntBASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 AC009154.2-201ENST00000621177 724 ntBASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.52■■□□□ 1.04
SMC1BQ8NDV3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SMC1BQ8NDV3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 FAM86GP-201ENST00000448322 971 ntBASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 MIR4751-201ENST00000578027 74 ntBASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 RNF165-205ENST00000588679 2904 ntBASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC1BQ8NDV3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 HCG4B-203ENST00000450128 991 ntBASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 TERF1P3-201ENST00000505638 1227 ntBASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 AC079776.2-201ENST00000641154 1609 ntBASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.5■■□□□ 1.03
SMC1BQ8NDV3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 AL359881.2-201ENST00000602973 570 ntBASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SMC1BQ8NDV3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.48■■□□□ 1.03
SMC1BQ8NDV3 AC022494.1-201ENST00000466044 728 ntBASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms