Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 KRT18P65-201ENST00000439811 1286 ntBASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 MTCL1P1-201ENST00000446207 792 ntBASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 BNIP3P18-201ENST00000593976 575 ntBASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC60Q8IWA6 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 AC004408.2-201ENST00000623613 2777 ntBASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 MINOS1P3-201ENST00000457048 203 ntBASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC60Q8IWA6 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 NUS1P2-201ENST00000417358 873 ntBASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 EMBP1-201ENST00000458200 901 ntBASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC60Q8IWA6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC60Q8IWA6 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms