Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB1Q86U70 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB1Q86U70 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB1Q86U70 HCG11-201ENST00000411553 5696 ntBASIC18.2■□□□□ 0.5
LDB1Q86U70 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 TERF1P1-201ENST00000311003 1181 ntBASIC18.2■□□□□ 0.5
LDB1Q86U70 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB1Q86U70 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 ATP5G1P1-201ENST00000448724 379 ntBASIC18.2■□□□□ 0.5
LDB1Q86U70 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.2■□□□□ 0.5
LDB1Q86U70 AC005363.2-201ENST00000618631 242 ntBASIC18.2■□□□□ 0.5
LDB1Q86U70 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 AC026471.1-201ENST00000564629 3026 ntBASIC18.2■□□□□ 0.5
LDB1Q86U70 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LDB1Q86U70 AC138028.4-201ENST00000564984 1845 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 AP000997.3-201ENST00000623333 2250 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 AC005521.1-201ENST00000393351 872 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 AC113347.1-201ENST00000413321 391 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 AL137013.1-201ENST00000432946 1228 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 KRT18P57-201ENST00000443599 1254 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LDB1Q86U70 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LDB1Q86U70 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.19■□□□□ 0.5
LDB1Q86U70 MIR3917-201ENST00000580971 93 ntBASIC18.19■□□□□ 0.5
LDB1Q86U70 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LDB1Q86U70 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB1Q86U70 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LDB1Q86U70 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB1Q86U70 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.18■□□□□ 0.5
LDB1Q86U70 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.18■□□□□ 0.5
LDB1Q86U70 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.18■□□□□ 0.5
LDB1Q86U70 AL441883.1-201ENST00000566170 1045 ntBASIC18.18■□□□□ 0.5
LDB1Q86U70 MIR3180-4-201ENST00000582223 153 ntBASIC18.18■□□□□ 0.5
LDB1Q86U70 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LDB1Q86U70 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LDB1Q86U70 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB1Q86U70 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB1Q86U70 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB1Q86U70 AC008764.6-201ENST00000595909 2069 ntBASIC18.18■□□□□ 0.5
LDB1Q86U70 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB1Q86U70 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
LDB1Q86U70 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB1Q86U70 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB1Q86U70 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB1Q86U70 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB1Q86U70 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms