Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 EGLN1P1-201ENST00000531623 762 ntBASIC20.8■□□□□ 0.92
ATL3Q6DD88 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.8■□□□□ 0.92
ATL3Q6DD88 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATL3Q6DD88 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
ATL3Q6DD88 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ATL3Q6DD88 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 SEC1P-202ENST00000473944 940 ntBASIC20.78■□□□□ 0.92
ATL3Q6DD88 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ATL3Q6DD88 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
ATL3Q6DD88 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 LTB4R2-202ENST00000528054 3092 ntBASIC20.77■□□□□ 0.92
ATL3Q6DD88 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.77■□□□□ 0.92
ATL3Q6DD88 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 TSPY7P-201ENST00000431358 1114 ntBASIC20.77■□□□□ 0.92
ATL3Q6DD88 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 AL512604.3-201ENST00000569583 964 ntBASIC20.77■□□□□ 0.92
ATL3Q6DD88 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.77■□□□□ 0.92
ATL3Q6DD88 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ATL3Q6DD88 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
ATL3Q6DD88 KRT17P2-201ENST00000300992 1314 ntBASIC20.77■□□□□ 0.91
ATL3Q6DD88 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
ATL3Q6DD88 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.77■□□□□ 0.91
ATL3Q6DD88 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
ATL3Q6DD88 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ATL3Q6DD88 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.76■□□□□ 0.91
ATL3Q6DD88 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms