Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 AC141586.3-201ENST00000562166 1838 ntBASIC17.48■□□□□ 0.39
COL28A1Q2UY09 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
COL28A1Q2UY09 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 MIR3917-201ENST00000580971 93 ntBASIC17.47■□□□□ 0.39
COL28A1Q2UY09 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 AC239800.4-201ENST00000603712 296 ntBASIC17.47■□□□□ 0.39
COL28A1Q2UY09 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.47■□□□□ 0.39
COL28A1Q2UY09 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 GPAT2P1-201ENST00000444924 1672 ntBASIC17.46■□□□□ 0.39
COL28A1Q2UY09 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 SCARNA2-201ENST00000458748 420 ntBASIC17.46■□□□□ 0.39
COL28A1Q2UY09 AC112482.1-201ENST00000492080 688 ntBASIC17.46■□□□□ 0.39
COL28A1Q2UY09 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 AL356488.2-201ENST00000602755 427 ntBASIC17.46■□□□□ 0.39
COL28A1Q2UY09 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL28A1Q2UY09 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL28A1Q2UY09 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms