Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 INGX-201ENST00000359239 846 ntBASIC17.65■□□□□ 0.42
FOXA1P55317 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.65■□□□□ 0.42
FOXA1P55317 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
FOXA1P55317 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.65■□□□□ 0.42
FOXA1P55317 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
FOXA1P55317 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.65■□□□□ 0.42
FOXA1P55317 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
FOXA1P55317 AC139713.2-201ENST00000641328 2723 ntBASIC17.65■□□□□ 0.42
FOXA1P55317 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
FOXA1P55317 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA1P55317 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA1P55317 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
FOXA1P55317 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
FOXA1P55317 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.64■□□□□ 0.42
FOXA1P55317 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
FOXA1P55317 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
FOXA1P55317 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
FOXA1P55317 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
FOXA1P55317 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXA1P55317 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXA1P55317 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.64■□□□□ 0.41
FOXA1P55317 MIR1238-201ENST00000408483 83 ntBASIC17.64■□□□□ 0.41
FOXA1P55317 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.64■□□□□ 0.41
FOXA1P55317 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.64■□□□□ 0.41
FOXA1P55317 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXA1P55317 AC104390.1-201ENST00000555663 520 ntBASIC17.64■□□□□ 0.41
FOXA1P55317 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.64■□□□□ 0.41
FOXA1P55317 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.64■□□□□ 0.41
FOXA1P55317 MIR4785-201ENST00000585005 73 ntBASIC17.64■□□□□ 0.41
FOXA1P55317 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
FOXA1P55317 AC112497.1-201ENST00000624824 639 ntBASIC17.64■□□□□ 0.41
FOXA1P55317 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
FOXA1P55317 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
FOXA1P55317 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA1P55317 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 AC020916.1-201ENST00000587762 1774 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA1P55317 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA1P55317 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 CCR12P-201ENST00000446203 998 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 BX088651.1-201ENST00000540551 451 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 AL355075.4-201ENST00000554988 638 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 AL645608.8-201ENST00000606034 2086 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
FOXA1P55317 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
FOXA1P55317 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.63■□□□□ 0.41
FOXA1P55317 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXA1P55317 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA1P55317 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA1P55317 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
FOXA1P55317 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
FOXA1P55317 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA1P55317 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA1P55317 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
FOXA1P55317 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA1P55317 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA1P55317 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA1P55317 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms