Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL928711.1-201ENST00000570165 459 ntBASIC21.03■□□□□ 0.96
CTCFP49711 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.03■□□□□ 0.96
CTCFP49711 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.03■□□□□ 0.96
CTCFP49711 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.03■□□□□ 0.96
CTCFP49711 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.03■□□□□ 0.96
CTCFP49711 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.03■□□□□ 0.96
CTCFP49711 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.03■□□□□ 0.96
CTCFP49711 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
CTCFP49711 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 AC112907.3-201ENST00000577781 2400 ntBASIC21.03■□□□□ 0.96
CTCFP49711 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTCFP49711 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.02■□□□□ 0.96
CTCFP49711 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.02■□□□□ 0.96
CTCFP49711 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CTCFP49711 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.02■□□□□ 0.96
CTCFP49711 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CTCFP49711 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.02■□□□□ 0.96
CTCFP49711 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.02■□□□□ 0.96
CTCFP49711 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CTCFP49711 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTCFP49711 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.02■□□□□ 0.96
CTCFP49711 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CTCFP49711 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTCFP49711 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTCFP49711 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CTCFP49711 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.02■□□□□ 0.95
CTCFP49711 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CTCFP49711 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CTCFP49711 RCC2P3-201ENST00000418112 1537 ntBASIC21.01■□□□□ 0.95
CTCFP49711 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.01■□□□□ 0.95
CTCFP49711 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.01■□□□□ 0.95
CTCFP49711 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.01■□□□□ 0.95
CTCFP49711 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.01■□□□□ 0.95
CTCFP49711 AFG3L1P-217ENST00000557444 2447 ntBASIC21.01■□□□□ 0.95
CTCFP49711 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.01■□□□□ 0.95
CTCFP49711 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.01■□□□□ 0.95
CTCFP49711 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CTCFP49711 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTCFP49711 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CTCFP49711 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.01■□□□□ 0.95
CTCFP49711 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21■□□□□ 0.95
CTCFP49711 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21■□□□□ 0.95
CTCFP49711 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21■□□□□ 0.95
CTCFP49711 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21■□□□□ 0.95
CTCFP49711 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CTCFP49711 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21■□□□□ 0.95
CTCFP49711 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21■□□□□ 0.95
CTCFP49711 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CTCFP49711 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CTCFP49711 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.99■□□□□ 0.95
CTCFP49711 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTCFP49711 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.99■□□□□ 0.95
CTCFP49711 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
CTCFP49711 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms