Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.86■□□□□ 0.93
SMARCA1P28370 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SMARCA1P28370 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 AC112698.1-201ENST00000510299 916 ntBASIC20.85■□□□□ 0.93
SMARCA1P28370 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
SMARCA1P28370 AC011840.4-201ENST00000578471 627 ntBASIC20.85■□□□□ 0.93
SMARCA1P28370 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.85■□□□□ 0.93
SMARCA1P28370 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SMARCA1P28370 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SMARCA1P28370 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCA1P28370 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCA1P28370 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SMARCA1P28370 ABALON-201ENST00000629058 1903 ntBASIC20.84■□□□□ 0.93
SMARCA1P28370 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCA1P28370 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SMARCA1P28370 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.84■□□□□ 0.93
SMARCA1P28370 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCA1P28370 AC092119.3-201ENST00000612618 583 ntBASIC20.84■□□□□ 0.93
SMARCA1P28370 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.84■□□□□ 0.93
SMARCA1P28370 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCA1P28370 AC233702.3-201ENST00000578656 1387 ntBASIC20.84■□□□□ 0.93
SMARCA1P28370 AC135050.7-201ENST00000624508 2218 ntBASIC20.84■□□□□ 0.93
SMARCA1P28370 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCA1P28370 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCA1P28370 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SMARCA1P28370 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SMARCA1P28370 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCA1P28370 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.83■□□□□ 0.93
SMARCA1P28370 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCA1P28370 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCA1P28370 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.83■□□□□ 0.93
SMARCA1P28370 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCA1P28370 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms