Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.92□□□□□ -0.18
HLA-DMBP28068 AC036111.1-201ENST00000533973 1582 ntBASIC13.92□□□□□ -0.18
HLA-DMBP28068 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HLA-DMBP28068 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 AL096828.2-201ENST00000567259 1965 ntBASIC13.91□□□□□ -0.18
HLA-DMBP28068 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 AC087499.1-201ENST00000418141 1075 ntBASIC13.91□□□□□ -0.18
HLA-DMBP28068 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 DGCR10-201ENST00000609839 495 ntBASIC13.91□□□□□ -0.18
HLA-DMBP28068 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HLA-DMBP28068 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.91□□□□□ -0.18
HLA-DMBP28068 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 AC034236.2-201ENST00000606662 1610 ntBASIC13.9□□□□□ -0.18
HLA-DMBP28068 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 MMP23A-201ENST00000234610 1017 ntBASIC13.9□□□□□ -0.18
HLA-DMBP28068 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HLA-DMBP28068 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HLA-DMBP28068 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.9□□□□□ -0.19
HLA-DMBP28068 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 PHGDH-209ENST00000641074 1780 ntBASIC13.89□□□□□ -0.19
HLA-DMBP28068 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 GMCL1P1-201ENST00000463439 1581 ntBASIC13.89□□□□□ -0.19
HLA-DMBP28068 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 UNC93B2-201ENST00000285383 730 ntBASIC13.89□□□□□ -0.19
HLA-DMBP28068 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms