Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.87■□□□□ 0.13
COL8A1P27658 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.87■□□□□ 0.13
COL8A1P27658 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 SPCS2P1-201ENST00000561636 679 ntBASIC15.87■□□□□ 0.13
COL8A1P27658 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.87■□□□□ 0.13
COL8A1P27658 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.87■□□□□ 0.13
COL8A1P27658 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC15.86■□□□□ 0.13
COL8A1P27658 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 AC112777.1-201ENST00000540175 1423 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 INTS4P1-201ENST00000438455 1935 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.86■□□□□ 0.13
COL8A1P27658 KRT89P-201ENST00000620027 1478 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 CNN2P11-201ENST00000429351 262 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.86■□□□□ 0.13
COL8A1P27658 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.86■□□□□ 0.13
COL8A1P27658 MIR3180-4-201ENST00000582223 153 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.86■□□□□ 0.13
COL8A1P27658 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.86■□□□□ 0.13
COL8A1P27658 AC064836.3-201ENST00000607928 673 ntBASIC15.86■□□□□ 0.13
COL8A1P27658 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.86■□□□□ 0.13
COL8A1P27658 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.86■□□□□ 0.13
COL8A1P27658 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.86■□□□□ 0.13
COL8A1P27658 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.86■□□□□ 0.13
COL8A1P27658 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL8A1P27658 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL8A1P27658 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.85■□□□□ 0.13
COL8A1P27658 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 KRT18P2-201ENST00000447938 1258 ntBASIC15.85■□□□□ 0.13
COL8A1P27658 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
COL8A1P27658 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.85■□□□□ 0.13
COL8A1P27658 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.85■□□□□ 0.13
COL8A1P27658 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.85■□□□□ 0.13
COL8A1P27658 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 AC020907.5-201ENST00000624372 1936 ntBASIC15.85■□□□□ 0.13
COL8A1P27658 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
COL8A1P27658 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.85■□□□□ 0.13
COL8A1P27658 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL8A1P27658 AL162377.1-201ENST00000618844 1793 ntBASIC15.85■□□□□ 0.13
COL8A1P27658 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.85■□□□□ 0.13
COL8A1P27658 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.84■□□□□ 0.13
COL8A1P27658 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL8A1P27658 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms