Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX4O60224 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SSX4O60224 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX4O60224 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SSX4O60224 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX4O60224 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.55■□□□□ 0.24
SSX4O60224 AC026271.3-201ENST00000571884 352 ntBASIC16.55■□□□□ 0.24
SSX4O60224 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.55■□□□□ 0.24
SSX4O60224 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 AC022211.2-201ENST00000585075 2527 ntBASIC16.55■□□□□ 0.24
SSX4O60224 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SSX4O60224 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.54■□□□□ 0.24
SSX4O60224 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 CRYGFP-201ENST00000418459 633 ntBASIC16.54■□□□□ 0.24
SSX4O60224 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 ATP5G1P1-201ENST00000448724 379 ntBASIC16.54■□□□□ 0.24
SSX4O60224 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SSX4O60224 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSX4O60224 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.54■□□□□ 0.24
SSX4O60224 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.53■□□□□ 0.24
SSX4O60224 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SSX4O60224 PHGDH-210ENST00000641115 1638 ntBASIC16.53■□□□□ 0.24
SSX4O60224 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 B3GAT3P1-201ENST00000471720 806 ntBASIC16.53■□□□□ 0.24
SSX4O60224 AC097488.1-201ENST00000507834 756 ntBASIC16.53■□□□□ 0.24
SSX4O60224 KRT18P16-201ENST00000510337 1294 ntBASIC16.53■□□□□ 0.24
SSX4O60224 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
SSX4O60224 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.53■□□□□ 0.24
SSX4O60224 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSX4O60224 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SSX4O60224 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms