Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX1O00570 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
SOX1O00570 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.3■□□□□ 0.68
SOX1O00570 AC055876.3-201ENST00000431496 288 ntBASIC19.3■□□□□ 0.68
SOX1O00570 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SOX1O00570 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.3■□□□□ 0.68
SOX1O00570 AC015911.4-201ENST00000588022 1070 ntBASIC19.3■□□□□ 0.68
SOX1O00570 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC19.3■□□□□ 0.68
SOX1O00570 AC138649.4-201ENST00000612222 287 ntBASIC19.3■□□□□ 0.68
SOX1O00570 AC004790.2-201ENST00000623588 572 ntBASIC19.3■□□□□ 0.68
SOX1O00570 AC008761.3-201ENST00000624803 892 ntBASIC19.3■□□□□ 0.68
SOX1O00570 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SOX1O00570 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX1O00570 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SOX1O00570 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SOX1O00570 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX1O00570 CLDN5-201ENST00000403084 2357 ntBASIC19.29■□□□□ 0.68
SOX1O00570 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 AC006504.4-201ENST00000592118 1568 ntBASIC19.29■□□□□ 0.68
SOX1O00570 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.29■□□□□ 0.68
SOX1O00570 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.29■□□□□ 0.68
SOX1O00570 BASP1P1-201ENST00000430708 665 ntBASIC19.29■□□□□ 0.68
SOX1O00570 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.29■□□□□ 0.68
SOX1O00570 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.29■□□□□ 0.68
SOX1O00570 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.29■□□□□ 0.68
SOX1O00570 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.29■□□□□ 0.68
SOX1O00570 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX1O00570 CR383656.12-201ENST00000549567 513 ntBASIC19.29■□□□□ 0.68
SOX1O00570 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.29■□□□□ 0.68
SOX1O00570 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SOX1O00570 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.29■□□□□ 0.68
SOX1O00570 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX1O00570 AC010507.1-201ENST00000633895 436 ntBASIC19.29■□□□□ 0.68
SOX1O00570 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SOX1O00570 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX1O00570 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SOX1O00570 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX1O00570 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SOX1O00570 ATP5G2P4-201ENST00000442175 420 ntBASIC19.28■□□□□ 0.68
SOX1O00570 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SOX1O00570 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX1O00570 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 AC009154.2-201ENST00000621177 724 ntBASIC19.28■□□□□ 0.68
SOX1O00570 AC073592.5-201ENST00000624854 528 ntBASIC19.28■□□□□ 0.68
SOX1O00570 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX1O00570 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX1O00570 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.27■□□□□ 0.68
SOX1O00570 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 AC003669.1-201ENST00000334569 611 ntBASIC19.27■□□□□ 0.68
SOX1O00570 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.27■□□□□ 0.68
SOX1O00570 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.27■□□□□ 0.68
SOX1O00570 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 AC067863.1-201ENST00000494933 530 ntBASIC19.27■□□□□ 0.68
SOX1O00570 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.27■□□□□ 0.68
SOX1O00570 AC073592.4-201ENST00000623827 446 ntBASIC19.27■□□□□ 0.68
SOX1O00570 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX1O00570 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX1O00570 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
SOX1O00570 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SOX1O00570 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SOX1O00570 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
SOX1O00570 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SOX1O00570 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX1O00570 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SOX1O00570 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms