Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.38■□□□□ 0.37
PDLIM1O00151 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.38■□□□□ 0.37
PDLIM1O00151 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM1O00151 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.37■□□□□ 0.37
PDLIM1O00151 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
PDLIM1O00151 KRASP1-201ENST00000407852 552 ntBASIC17.37■□□□□ 0.37
PDLIM1O00151 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.37■□□□□ 0.37
PDLIM1O00151 TSPY23P-201ENST00000440136 739 ntBASIC17.37■□□□□ 0.37
PDLIM1O00151 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 AL158047.1-201ENST00000445918 881 ntBASIC17.37■□□□□ 0.37
PDLIM1O00151 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
PDLIM1O00151 AC110285.5-201ENST00000611501 352 ntBASIC17.37■□□□□ 0.37
PDLIM1O00151 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.37■□□□□ 0.37
PDLIM1O00151 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.37■□□□□ 0.37
PDLIM1O00151 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PDLIM1O00151 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PDLIM1O00151 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PDLIM1O00151 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.36■□□□□ 0.37
PDLIM1O00151 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PDLIM1O00151 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.36■□□□□ 0.37
PDLIM1O00151 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.36■□□□□ 0.37
PDLIM1O00151 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.36■□□□□ 0.37
PDLIM1O00151 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.36■□□□□ 0.37
PDLIM1O00151 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 UBE2SP1-201ENST00000450587 669 ntBASIC17.36■□□□□ 0.37
PDLIM1O00151 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
PDLIM1O00151 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.36■□□□□ 0.37
PDLIM1O00151 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.36■□□□□ 0.37
PDLIM1O00151 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PDLIM1O00151 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms