Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
COL17A1Q9UMD9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 CRYGEP-201ENST00000412192 528 ntBASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 ELK2BP-201ENST00000415014 1224 ntBASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 GAPDHP21-201ENST00000450301 1010 ntBASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL17A1Q9UMD9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 DUT-210ENST00000559935 569 ntTSL 3 BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 AC004817.3-201ENST00000602957 2129 ntBASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL17A1Q9UMD9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 VN2R19P-201ENST00000442399 1052 ntBASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 Z82202.1-201ENST00000623446 1880 ntBASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC27.47■■□□□ 1.99
COL17A1Q9UMD9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 AC087641.1-201ENST00000557561 1021 ntBASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 AC093520.2-201ENST00000561830 333 ntBASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
COL17A1Q9UMD9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC27.45■■□□□ 1.99
COL17A1Q9UMD9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.98
COL17A1Q9UMD9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 AC004461.1-201ENST00000412461 403 ntBASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 KRT18P41-201ENST00000518924 1277 ntBASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL17A1Q9UMD9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms