Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 AC011498.5-201ENST00000592027 486 ntBASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM39Q9HCM9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 LTB4R2-202ENST00000528054 3092 ntBASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM39Q9HCM9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 AL024508.2-201ENST00000607749 1894 ntBASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM39Q9HCM9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms